Internal Medicine

Prakash M. Nadkarni, MD

Portrait

Research Professor of Internal Medicine  - General Internal Medicine

Contact Information

Email: prakash-nadkarni@uiowa.edu

Education

MBBS, Bombay University, Bombay, India
MD, Pharmacology, Bombay University, Bombay, India

Diploma, Computer Management, Bombay University, Bombay, India
Certificate, Software Technology, National Centre for Software Technology, (Tata Institute of Fundamental Research), Bombay, India
Diploma, Radiation Medicine, Bombay University, Bombay, India

Research Summary

Biomedical Informatics – the application of computing to problems related to clinical and life sciences – is a means to an end, which is the ultimate improvement of processes aimed at delivering better healthcare and better clinical/preclinical research. As such, it is highly collaborative and inter-disciplinary: problems are suggested by unsolved needs of clinicians and researchers in a variety of fields, and if the solution involves computing or information technology, that is where I come in. To ensure that the solution meets the approval of its users, it is developed in iterative cycles through close collaboration. While I thus provide "service", "research" comes from devising ways to deliver solutions efficaciously. To quote the late Saul Alinsky, Hell is a place where one does the same thing over and over again, and efficacious delivery often involves creating novel and generalizable approaches that save the trouble of having to repeatedly reinvent wheels.

My primary area of research involves capturing descriptions of electronic systems in sufficient detail, and with sufficient richness of structure, as to facilitate their understanding and documentation and more importantly, automation of operations that would otherwise require tedious manual programming. The latter aspect exemplifies what is called “creative laziness”: working harder initially to come up with a generalizable solution to a family of problems, which in turn reduces future effort by eliminating or greatly reducing programming/maintenance drudgery. The issue of electronic descriptions (metadata) is sufficiently broad as to apply in a variety of sub-domains: my publications are consequently fairly diverse, though I have focused in the past on support of system designs to support clinical and preclinical research.

All Publications

Nadkarni P, Marenco L.  Data integration in healthcare: an overview.  Academic Press.  2013. 

Nadkarni P, Parikh C.  An eUtils toolset and its use for creating a pipeline to link genomics and proteomics analyses to domain-specific biomedical literature.  J Clin Bioinforma.  2012. 2(1):9.

Nadkarni P, Parikh C.  An eUtils toolset and its use for creating a pipeline to link genomics and proteomics analyses to domain-specific biomedical literature..  Journal of clinical bioinformatics.  2012. 2(1):9.
[PubMed]

Nadkarni P, Marenco L, Brandt C.  Clinical Research Information Systems.  Andrews J.  2012. 

Shah H, Allard R, Enberg R, Krishnan G, Williams P, Nadkarni P.  Requirements for guidelines systems: implementation challenges and lessons from existing software-engineering efforts..  BMC Med Inform Decis Mak.  2012. 12:16.

Shah H, Allard R, Enberg R, Krishnan G, Williams P, Nadkarni P.  Requirements for guidelines systems: implementation challenges and lessons from existing software-engineering efforts..  BMC medical informatics and decision making.  2012. 12:16.
[PubMed]

Morse R, Nadkarni P, Schoenfeld D, Finkelstein D.  Web-browser encryption of personal health information.  BMC medical informatics and decision making.  2011 November. 11:70.
[PubMed]

Nadkarni P, Chapman W, Ohno-Machado L.  Natural Language Processing: An Introduction.  J Am Med Inform Assoc.  2011 September. 18(5):544-51.

Chapman W, Nadkarni P, Hirschman D, Savova G, Uzuner O.  Overcoming Barriers to NLP for Clinical Text: the Role of Shared Tasks and the Need for Additional Creative Solutions.  J Am Med Inform Assoc.  2011 September. 18(5):540-3.

Chandawarkar R, Ruscher K, Krajewski A, Garg M, Pfeiffer C, Singh R, Longo W, Kozol R, Lesnikoski B, Nadkarni P.  Pretraining- & and Post-Training Assessment of Residents' Performance in the Fourth Accreditation Council for Graduate Medical Education Competency Patient Communication Skills.  Archives of Surgery.  2011 August. 146(8):916-21.
[PubMed]

Richesson R, Nadkarni P.  Data standards for clinical research data collection forms: current status and challenges.  Journal of the American Medical Informatics Association : JAMIA.  2011 May. 18(3):341-6.
[PubMed]

Nadkarni P, Kemp R, Parikh C.  Leveraging a Clinical Research Information System to assist Biospecimen Data and Workflow Management: A Hybrid Approach.  BMC Journal of Clinical Bioinformatics.  2011. 1:22.

Nadkarni P, Kemp R, Parikh C.  Leveraging a clinical research information system to assist biospecimen data and workflow management: a hybrid approach..  Journal of clinical bioinformatics.  2011. 1:22.
[PubMed]

Nadkarni P.  Metadata-driven Software Systems in Biomedicine: Designing systems that can adapt to changing knowledge.  1. Springer;  2011.

Nadkarni P, Ohno-Machado L, Chapman W.  Natural language processing: an introduction..  Journal of the American Medical Informatics Association : JAMIA.  2011. 18(5):544-51.
[PubMed]

Chandawarkar R, Ruscher K, Krajewski A, Garg M, Pfeiffer C, Singh R, Longo W, Kozol R, Lesnikoski B, Nadkarni P.  Pretraining- & and Post-Training Assessment of Residents’ Performance in the Fourth Accreditation Council for Graduate Medical Education Competency Patient Communication Skills.  Archives of Surgery.  2011. 146(8):916-21.

Morse R, Nadkarni P, Schoenfeld D, Finkelstein D.  Web-browser encryption of personal health information.  BMC Med Inform Decid Mak.  2011. 11:70.

Nadkarni P, Darer J.  Determining correspondences between high-frequency MedDRA concepts and SNOMED: a case study..  BMC medical informatics and decision making.  2010. 10:66.
[PubMed]

Nadkarni P.  Drug safety surveillance using de-identified EMR and claims data: issues and challenges..  Journal of the American Medical Informatics Association : JAMIA.  2010. 17(6):671-4.
[PubMed]

Marenco L, Wang R, Nadkarni P.  Automated Database Mediation using Ontological Metadata Mappings.  Journal of the American Medical Informatics Association : JAMIA.  2009 September. 16(5):723-37.
[PubMed]

Neklason D, Kerber R, Nilson D, Anton-Culver H, Schwartz A, Griffin C, Lowery J, Schildkraut J, Evans J, Tomlinson G, Strong L, Miller A, Stopfer J, Finkelstein D, Nadkarni P, Kasten C, Mineau G, Burt R.  Common familial colorectal cancer linked to chromosome 7q31: a genome-wide analysis..  Cancer research.  2008 November. 68(21):8993-7.
[PubMed]

Crasto C, Marceno L, Liu N, Morse T, Cheung K, Lai P, Bahl G, Maisar P, Lam H, Lim E, Chen H, Nadkarni P, Migliore M, Miller P, Shepherd G.  SenseLab: new developments in disseminating neuroscience information..  Brief Bioinformatics.  2007 May. 8(3):150-62.
[PubMed]

Nadkarni P, Marenco L.  Database architectures for neuroscience applications. Methods in Molecular Biology.  Methods in Molecular Biology.  2007. 401:37-52.
[PubMed]

Nadkarni P, Marenco L.  Database architectures for neuroscience applications. Methods in Molecular Biology.  Methods in Molecular Biology.  2007. 401:37-52.
[PubMed]

Dinu V, Nadkarni P.  Guidelines for the effective use of entity-attribute-value modeling for biomedical databases.  International journal of medical informatics.  2007. 76(11-12):769-79.
[PubMed]

Crasto C, Marenco L, Liu N, Morse T, Cheung K, Lai P, Bahl G, Masiar P, Lam H, Lim E, Chen H, Nadkarni P, Migliore M, Miller P, Shepherd G.  SenseLab: new developments in disseminating neuroscience information.  Brief Bioinformatics.  2007. 8(3):150-62.
[PubMed]

Brandt C, Argraves S, Money R, Ananth G, Trocky N, Nadkarni P.  Informatics tools to improve clinical research study implementation..  Contemporary clinical trials.  2006 April. 27(2):112-22.
[PubMed]

Dinu V, Nadkarni P, Brandt C.  Pivoting Approaches for Bulk Extraction of Entity-Attribute-Value Data.  Computer methods and programs in biomedicine.  2006 April. 82(1):38-43.
[PubMed]

Nadkarni P, Marenco L.  Database architectures for Neuroscience.  Methods in Neuroinformatics.  2006. 

Marenco L, Nadkarni P, Gupta K, Martone M.  Interoperability across Neuroscience Databases.  Humana Press.  2006. 

Nadkarni P, Brandt C.  The Common Data Elements for cancer research: remarks on functions and structure..  Methods of information in medicine.  2006. 45(6):594-601.
[PubMed]

Argraves S, Brandt C, Money R, Nadkarni P.  Informatics tools to improve clinical research.  AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium.  2005 September. 

Nadkarni P, Wiepert M.  Translating pharmacogenomics discoveries into clinical practice: the role of curated databases..  Pharmacogenomics.  2005 July. 6(5):451-4.
[PubMed]

Brandt C, Lu C, Nadkarni P.  Automating identification of adverse events related to abnormal lab results using standard vocabularies..  AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium.  2005. 
[PubMed]

Sun K, Nadkarni P, Brandt C.  Metadata driven generation of reports for clinical studies..  AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium.  2005. 
[PubMed]

Holford M, Li N, Nadkarni P.  VitaPad: Visualization tools for analysis of pathway data.  Bioinformatics (Oxford, England).  2005. 21(8):1596-1602.
[PubMed]

Deshpande A, Shiffman R, Nadkarni P.  Metadata-driven Delphi rating on the Internet..  Computer methods and programs in biomedicine.  2005 January. 77(1):49-56.
[PubMed]

Nadkarni P.  Evolving Standards for Clinical Content in Biomedicine: Overview and Lessons.  International journal of medical informatics.  2004 September. 1(1):112-24.

Brandt C, Cohen D, Shifman M, Miller P, Nadkarni P, Frawley S.  Approaches and informatics tools to assist in the integration of similar clinical research questionnaires..  Methods of information in medicine.  2004. 43(2):156-62.
[PubMed]

Sun K, Charpentier P, O'Leary J, Nadkarni P, Brandt C.  Geriatrics Instrument Research Library (GRIL).  Medinfo. MEDINFO.  2004. 

Brandt C, Sun K, Charpentier P, Nadkarni P.  Integration of Web-based and PC-based clinical research databases..  Methods of information in medicine.  2004. 43(3):287-95.
[PubMed]

Marenco L, Wang T, Shepherd G, Miller P, Nadkarni P.  QIS: A Framework for Biomedical Database Federation.  Journal of the American Medical Informatics Association : JAMIA.  2004. 11(6):523-34.
[PubMed]

Brandt C, Lu C, Sun K, Deshpande M, Ananth G, Nadkarni P.  TrialDB: Open-Source Clinical Data Managment Software.  AMIA.  2003 November. 

Nadkarni P, Sun K, Brandt C.  Supporting genomic and phenotypic data capture in clinical study data management systems.  GCRC.  2003 October. 

Nadkarni P, Gadagkar R, Lu C, Deshpande A, Sun K, Brandt C.  BrandtSecurity in the context of a Generic Clinical Study Data Management System.  2003 July. 

Deshpande A, Brandt C, Nadkarni P.  Temporal query of attribute-value patient data: utilizing the constraints of clinical studies..  International journal of medical informatics.  2003 April. 70(1):59-77.
[PubMed]

Nadkarni P, Sun K, Wiepert M.  Designing and Implementing Special-Purpose Databases: Lessons from the Pharmacogenetic Network.  Pharmacogenomics.  2003. 3(5):687-96.
[PubMed]

Crasto C, Marenco L, Migliore M, Mao B, Nadkarni P, Miller P, Shepherd G.  Text mining neuroscience journal articles to populate neuroscience databases..  Neuroinformatics.  2003. 1(3):215-37.
[PubMed]

Anton-Culver H, Ziogas A, Bowen D, Finkelstein D, Griffin C, Hanson J, Isaacs C, Kasten-Sportes C, Mineau G, Nadkarni P, Rimer B, Schildkraut J, Strong L, Weber B, Winn D, Hiatt R, Nayfield S.  The Cancer Genetics Network: recruitment results and pilot studies.  Community Genetics.  2003. 6(3):171-7.
[PubMed]

Nadkarni P.  The challenges of recording phenotype in a generalizable and computable form..  The pharmacogenomics journal.  2003. 3(1):8-10.
[PubMed]

Brandt C, Deshpande A, Lu C, Ananth G, Sun K, Gadagkar R, Morse R, Rodriguez C, Miller P, Nadkarni P.  TrialDB: A web-based Clinical Study Data Management System..  AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium.  2003. 
[PubMed]

Brandt C, Morse R, Matthews K, Sun K, Deshpande A, Gadagkar R, Cohen D, Miller P, Nadkarni P.  Metadata-driven creation of data marts from an EAV-modeled clinical research database..  International journal of medical informatics.  2002 November. 65(3):225-41.
[PubMed]

Nadkarni P, Sun K, Wiepert M.  Towards a generic database representation of phenotypic data.  GCRC.  2002 July. 

Nadkarni P.  An introduction to information retrieval: applications in genomics..  The pharmacogenomics journal.  2002. 2(2):96-102.
[PubMed]

Nadkarni P.  Biomedical Databases: an E-Healthcare Perspective.  International journal of healthcare technology and management.  2001. 5(6):353-65.

Nadkarni P, Marenco L.  Easing the transition between attribute-value databases and conventional databases for scientific data..  Proceedings / AMIA ... Annual Symposium. AMIA Symposium.  2001. 
[PubMed]

Fernando S, Nadkarni P, Brandt C.  Generation of pedigree diagrams for web display using scalable vector graphics from a clinical trials database.  AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium.  2001. 

Miller P, Nadkarni P, Singer M, Marenco L, Hines M, Shepherd G.  Integration of multidisciplinary sensory data: a pilot model of the human brain project approach.  Journal of the American Medical Informatics Association : JAMIA.  2001. 8(1):34-48.
[PubMed]

Nadkarni P, Chen R, Brandt C.  UMLS Concept Indexing for Production Databases: A Feasibility Study.  Journal of the American Medical Informatics Association : JAMIA.  2001. 8(1):80-91.
[PubMed]

Mutalik P, Deshpande A, Nadkarni P.  Use of general-purpose negation detection to augment concept indexing of medical documents: a quantitative study using the UMLS..  Journal of the American Medical Informatics Association : JAMIA.  2001. 8(6):598-609.
[PubMed]

Brandt C, Nadkarni P.  Web-based UMLS concept retrieval by automatic text scanning: a comparison of two methods.  Computer methods and programs in biomedicine.  2001 January. 64(1):37-43.
[PubMed]

Chen R, Nadkarni P, Levin F, Miller P, Erdos J, Rosenheck R.  Using a computer database to monitor compliance with pharmacotherapeutic guidelines for schizophrenia..  Psychiatric services (Washington, D.C.).  2000 June. 51(6):791-4.
[PubMed]

Perrotta P, Nadkarni P.  Integration of a hematopoietic progenitor cell program using the ACT/DB database system..  Computer methods and programs in biomedicine.  2000 March. 61(3):195-207.
[PubMed]

Chen R, Nadkarni P, Marenco L, Levin F, Erdos J, Miller P.  Exploring Performance Issues for a Clinical Database Organized Using an Entity-Attribute-Value Representation.  Journal of the American Medical Informatics Association : JAMIA.  2000. 7(5):475-487.
[PubMed]

Stein H, Nadkarni P, Erdos J, Miller P.  Exploring the degree of concordance of coded and textual data in answering clinical queries from a clinical data repository.  Journal of the American Medical Informatics Association : JAMIA.  2000. 7(1):42-54.
[PubMed]

Brandt C, Nadkarni P, Marenco L, Karras B, Lu C, Schacter L, Fisk J, Miller P.  Reengineering a database for clinical trials management: lessons for system architects.  Controlled Clinical Trials.  2000. 21(5):440-61.
[PubMed]

Skoufos E, Marenco L, Nadkarni P, Miller P, Shepherd G.  Olfactory receptor database: a sensory chemoreceptor resource..  Nucleic acids research.  2000 January. 28(1):341-3.
[PubMed]

Nadkarni P, Mirsky J, Emmanouil S, Healy M, Hines M, Miller P, Shepherd G.  Modeling Heterogeneous Data on the Nervous System in Bioinformatics Databases.  Kluwer Academic Publishers.  1999. 

Marenco L, Nadkarni P, Skoufos E, Shepherd G, Miller P.  Neuronal database integration: the Senselab EAV data model.  AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium.  1999. 

Nadkarni P, Marenco L, Chen R, Skoufos E, Shepherd G, Miller P.  Organization of heterogeneous scientific data using the EAV/CR representation..  Journal of the American Medical Informatics Association : JAMIA.  1999. 6(6):478-93.
[PubMed]

Skoufos E, Healy M, Singer M, Nadkarni P, Miller P, Shepherd G.  Olfactory Receptor Database: a database of the largest eukaryotic gene family..  Nucleic acids research.  1999 January. 27(1):343-5.
[PubMed]

Nadkarni P.  CHRONOMERGE: an application for the merging and display of multiple time-stamped data streams..  Computers and biomedical research, an international journal.  1998 December. 31(6):451-64.
[PubMed]

Brandt C, Nadkarni P, Schacter L, Zelterman D, Li Y, Fisk J, Shultz E, Miller P.  ACT/DB: a clinical trials database being refined on a pilot basis at two medical centers.  AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium.  1998 November. 

Shepherd G, Mirsky J, Healy M, Singer M, Skoufos E, Hines M, Nadkarni P, Miller P.  The Human Brain Project: neuroinformatics tools for integrating, searching and modeling multidisciplinary neuroscience data..  Trends in neurosciences.  1998 November. 21(11):460-8.
[PubMed]

Mirsky J, Nadkarni P, Healy M, Miller P, Shepherd G.  Database tools for integrating and searching membrane property data correlated with neuronal morphology..  Journal of neuroscience methods.  1998 July. 82(1):105-21.
[PubMed]

Cheung K, Nadkarni P, Shin D.  A metadata approach to query interoperation between molecular biology databases..  Bioinformatics (Oxford, England).  1998. 14(6):486-97.
[PubMed]

Cheung K, Nadkarni P, Miller P, Shin D.  Automatic query mapping among genomic databases: a pilot exploration.  AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium.  1998. 

Nadkarni P, Brandt C, Frawley S, Sayward F, Einbinder R, Zelterman D, Schacter L, Miller P.  Managing attribute-value clinical trials data using the ACT/DB client-server database system.  Journal of the American Medical Informatics Association : JAMIA.  1998. 5(2):139-151.
[PubMed]

Nadkarni P.  Mapmerge: merge genomic maps.  Bioinformatics.  1998. 14(4):310-316.
[PubMed]

Nadkarni P.  Concept locator: a client-server application for retrieval of UMLS metathesaurus concepts through complex boolean query..  Computers and biomedical research, an international journal.  1997 August. 30(4):323-36.
[PubMed]

Nadkarni P.  Mapdiff: determining differences between two genomic maps..  Computer applications in the biosciences : CABIOS.  1997 June. 13(3):217-25.
[PubMed]

Healy M, Smith J, Singer M, Nadkarni P, Skoufos E, Miller P, Shepherd G.  Olfactory receptor database (ORDB): a resource for sharing and analyzing published and unpublished data..  Chemical senses.  1997 June. 22(3):321-6.
[PubMed]

Nadkarni P.  QAV: querying entity-attribute-value metadata in a biomedical database..  Computer methods and programs in biomedicine.  1997 June. 53(2):93-103.
[PubMed]

Mirsky J, Nadkarni P, Healy M, Miller P, Shepherd G.  NeuronDB: a database tool for enhancing experimental analysis of neuronal properties.  AchemS.  1997. 

Mirsky J, Nadkarni P, Hines M, Healy M, Miller P, Shepherd G.  NeuronDB: Database tools for integrating membrane property data.  AchemS.  1997. 

Shepherd G, Healy M, Singer M, Peterson B, Mirsky J, Wright L, Smith J, Nadkarni P, Miller P.  Senselab: a project in multidisciplinary, multilevel sensory integration.  Huerta MF.  1997. 

Healy M, Smith J, Singer M, Nadkarni P, Miller P, Shepherd G.  Tools for sharing and analyzing published and unpublished sequences.  Olfactory Receptor Database (ORDB).  1996 November. 

Cheung K, Nadkarni P, Miller P, Kidd K.  The Human Genome Diversity Project Database.  American Society for Human Genetics.  1996 October. 

Nadkarni P, Cheung K, Castiglione C, Miller P, Kidd K.  DNA Workbench: a database for support of regional chromosomal mapping.  Cold Spring Harbor.  1996 May. 
[PubMed]

Cheung K, Nadkarni P, Miller P, Kidd K.  The goal and current status of the Human Genome Diversity Project Database.  Cold Spring Harbor.  1996 May. 
[PubMed]

Montgomery K, Renault B, Nadkarni P, Yoon S, Marondel I, Lau S, Chang S, Grills G, Miller P, Kucherlapati R.  Toward high-throughput sequencing of chromosome 12: sequencing of a cosmid and discovery of two new keratin genes.  Cold Spring Harbor.  1996 May. 
[PubMed]

Nadkarni P, Banks A, Montgomery K, LeBlanc-Stracewski J, Miller P, Krauter K.  CONTIG EXPLORER: interactive marker-content map assembly..  Genomics.  1996 February. 31(3):301-10.
[PubMed]

Nadkarni P, Cheung K, Castiglione C, Miller P, Kidd K.  DNA Workbench: a database for support of regional chromosomal mapping..  Journal of Computational Biology.  1996. 3(2):319-329.

Cheung K, Nadkarni P, Silverstein S, Miller P, Kidd K.  PhenoDB: A database for the storage and analysis of pedigree and population genetic data.  Computers in Biomedical Research.  1996. 79:327-337.

Nadkarni P.  Management of evolving map data: data structures and algorithms based on the framework map..  Genomics.  1995 December. 30(3):565-73.
[PubMed]

Nadkarni P, Cheung K.  SQLGEN: a framework for rapid client-server database application development..  Computers and biomedical research, an international journal.  1995 December. 28(6):479-99.
[PubMed]

Miller P, Nadkarni P, Banks A, Bray-Ward P, Cheung K, Cupelli L, Herdman V, Kidd K, Krauter K, Marondel I, Montgomery K, Renault B, Ward D, Yoon S, Kucherlapati R.  Internet-based informatics support for a collaborative genome center to map chromosome 12.  1995 November. 
[PubMed]

Cheung K, Nadkarni P, Kidd J, Pakstis A, Silverstein S, Miller P, Kidd K.  A pilot database for the Human Genome Diversity Project.  Cold Spring Harbor.  1995 May. 
[PubMed]

Miller P, Banks A, Bray-Ward P, Cheung K, Cupelli L, Herdman V, Kidd K, Krauter K, Marondel I, Montomery K, Nadkarni P, Renault B, Ward D, Yoon S, Kucherlapati R.  An approach to providing Internet-based informatics support for a multi-institutional genome center.  Cold Spring Harbor.  1995 May. 
[PubMed]

Krauter K, Banks A, Bray-Ward P, Cheung K, Cuppelli L, Herdman V, Kidd K, Marondel I, Montgomery K, Miller P, Nadkarni P, Renault B, Ward D, Yoon S, Weissenbach J, Chumakov I, Choen D, Kucherlapati R.  An integrated physical map of human chromosome 12.  Cold Spring Harbor.  1995 May. 
[PubMed]

Miller P, Nadkarni P, Kucherlapati R, Krauter K, Kidd K, Ward D, Shepherd G, Berkowicz D.  Network-based informatics support of research collaborations in the Human Genome Project and the Human Brain Project..  Medinfo. MEDINFO.  1995. 8 Pt 2:1541-4.
[PubMed]

Nadkarni P, Bray-Ward P.  CEPH viewer: a client-server database to browse and manipulate CEPH physical mapping and linkage data..  Genomics.  1995 January. 25(1):318-20.
[PubMed]

Nadkarni P, Reeders S, Zhou J.  A modification of the ALIGN program to assist visual interpretation of mutated sequences..  Computer applications in the biosciences : CABIOS.  1994 June. 10(3):361-2.
[PubMed]

Miller P, Nadkarni P, Kidd K.  An Internet-based database for the chromosome 12 genome center.  1994 June. 
[PubMed]

Nadkarni P.  Facilitating User Navigation Across A Database Schema. ACM Workshop on Information Retrieval and Genomics.  ACM.  1994 May. 
[PubMed]

Nadkarni P, Bray-Ward P, Krauter K, Kucherlapati R, LeBalnc J, Montgomery K, Ward D, Yoon S, Miller P.  The Chromosome 12 Genome Center: Informatics Support of Internet-Based Collaboration.  Cold Spring Harbor.  1994 May. 
[PubMed]

Nadkarni P.  GDBDICT: a program to extract GDB schema information into a relational database..  Genomics.  1994 January. 19(1):185-6.
[PubMed]

Nadkarni P, Reeders S, Zhou J.  XTALIGN: A program to assist visual interpretation of mutated sequences.  Cold Spring Harbor.  1993 May. 
[PubMed]

Nadkarni P, Reeders S, Zhou J.  CECIL: A database for storing and retrieving clinical and molecular information on patients with Alport syndrome.  1993. 
[PubMed]

Nadkarni P, Reeders S, Zhou J.  CECIL: a database for storing and retrieving clinical and molecular information on patients with Alport syndrome..  Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care.  1993. 
[PubMed]

Shifman M, Nadkarni P, Miller P.  PFGE Mapper and PFGE Reader: Two tools to aid in the analysis and data input of pulse field gel electrophoresis maps.  1992 November. 

Sittig D, Shifman M, Nadkarni P, Miller P.  Parallel computation for medicine and biology: Experience with Linda.  Medinfo. MEDINFO.  1992 September. 92:14-19.

Seifer D, Honig J, Penzias A, Lavy G, Nadkarni P, Jones E, DeCherney A, Flynn S.  Flow cytometric analysis of deoxyribonucleic acid in human granulosa cells as a function of chronological age and ovulation induction regimen..  The Journal of clinical endocrinology and metabolism.  1992 August. 75(2):636-40.
[PubMed]

Miller P, Nadkarni P, Kidd K, Shifman M.  An institutional information architecture for database support of gene mapping laboratories.  Cold Spring Harbor.  1992 May. 
[PubMed]

Nadkarni P, Reeders S, Shifman M, Miller P.  CHROMINFO: A database for viewing and editing top-level chromosome data.  Cold Spring Harbor.  1992 May. 
[PubMed]

Shifman M, Nadkarni P, Miller P.  Interactive, graphical, computer-based tools for storing and constructing pulse field gel maps.  Cold Spring Harbor.  1992 May. 
[PubMed]

Miller P, Nadkarni P, Pearson W.  Comparing machine-independent versus machine-specific parallelization of a software platform for biological sequence comparison..  Computer applications in the biosciences : CABIOS.  1992 April. 8(2):167-75.
[PubMed]

Miller P, Nadkarni P, Bercovitz P.  Harnessing networked workstations as a powerful parallel computer: a general paradigm illustrated using three programs for genetic linkage analysis..  Computer applications in the biosciences : CABIOS.  1992 April. 8(2):141-7.
[PubMed]

Nadkarni P, Reeders S, Shifman M, Miller P.  CHROMINFO: a database for viewing and editing top-level chromosome data..  Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care.  1992. 
[PubMed]

Goradia T, Lange K, Miller P, Nadkarni P.  Fast computation of genetic likelihoods on human pedigree data..  Human heredity.  1992. 42(1):42-62.
[PubMed]

Dalvi S, Nadkarni P, Pardesi R, Gupta K.  Effect of peppermint oil on gastric emptying in man: a preliminary study using a radiolabelled solid test meal.  Indian J Phsyiol Pharmacol.  1991 July. 35(3):212-4.

Dalvi S, Nadkarni P, Pardesi R, Gupta K.  Effect of peppermint oil on gastric emptying in man: a preliminary study using a radiolabelled solid test meal..  Indian journal of physiology and pharmacology.  1991 July. 35(3):212-4.
[PubMed]

Miller P, Nadkarni P, Kidd K.  Parallelizing genetic linkage analysis using a machine-independent parallel programming language. Human Genome II.  Cold Spring Harbor.  1991 May. 
[PubMed]

Nadkarni P, Miller P.  Parallel computation for biological sequence comparison: comparing a portable model to the native model for the Intel Hypercube..  Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care.  1991. 
[PubMed]

Miller P, Nadkarni P, Carriero N.  Parallel computation and FASTA: confronting the problem of parallel database search for a fast sequence comparison algorithm..  Computer applications in the biosciences : CABIOS.  1991 January. 7(1):71-8.
[PubMed]

Nadkarni P, Miller P, Gelernter J, Carriero N, Pakstis A, Kidd K.  Parallelizing genetic linkage analysis: A case study for applying parallel computation in molecular biology.  1990 November. 

Miller P, Nadkarni P, Gelernter J, Carriero N, Pakstis A, Kidd K.  Parallel computation for molecular biology on an institution's network of UNIX workstations.  1990 October. 
[PubMed]

Nadkarni P, Miller P, Gelernter J, Carriero N, Pakstis A, Kidd K.  Parallelizing genetic linkage analysis: A case study of parallel computation in molecular biology.  American Medical Informatics Society.  1990 June. 
[PubMed]

Dalvi S, Nadkarni P, Gupta K.  Effect of Asparagus racemosus (Shatavari) on gastric emptying time in normal healthy volunteers.  J Postgrad Med.  1990 April. 36(2):91-94.

Dalvi S, Nadkarni P, Gupta K.  Effect of Asparagus racemosus (Shatavari) on gastric emptying time in normal healthy volunteers..  Journal of postgraduate medicine.  1990 April. 36(2):91-4.
[PubMed]

Khanna S, Pipalia D, Nadkarni P, Naik S.  Sucralfate in the short-term treatment of duodenal ulcer. A double-blind comparison with cimetidine and placebo.  J Assoc Physicians India.  1989 August. 37(8):503-5.

Khanna S, Pipalia D, Nadkarni P, Naik S.  Sucralfate in the short-term treatment of duodenal ulcer. A double-blind comparison with cimetidine and placebo..  The Journal of the Association of Physicians of India.  1989 August. 37(8):503-5.
[PubMed]

Parikh P, Charak B, Banavali S, Koppikar S, Giri N, Nadkarni P, Saikia T, Gopal R, Advani S.  A prospective randomized double-blind trial comparing metoclopramide alone with metoclopramide plus dexamethasone in preventing emesis induced by high-dose cisplatin.  Cancer.  1988. 62(10):2263-66.

Parikh P, Charak B, banvali S, Koppikar S, Giri N, Nadkarni P, Saikia T, Gopal R, Advani S.  A prospective randomized double-blind trial comparing metoclopramide alone with metoclopramide plus dexamethasone in preventing emesis induced by high-dose cisplatin.  Cancer research.  1988. 62(10):2263-2266.

Bakhle D, Nadkarni P, Shaligram S.  A computerized data base for drug interactions.  1987 November. 
[PubMed]

Dalyi S, Nadkarni P, Pardeshi R, Gupta K.  Effect of Peppermint oil on gastric emptying time.  Indian Association of Nuclear Medicine.  1987 November. 
[PubMed]

Kschirsagar N, Takle M, Nadkarni P, Satoskar R.  Effect of standard breakfast & lunch on sulphadimidine bioavailability.  Indian J Med Res.  1986 June. 83:618-22.

Kshirsagar N, Takle M, Nadkarni P, Satoskar R.  Effect of standard breakfast & lunch on sulphadimidine bioavailability..  The Indian journal of medical research.  1986 June. 83:618-22.
[PubMed]

Nadkarni P, Niar N, Mattay V, Soni P.  Factors affecting variability in the measurement of left ventricular ejection fraction by MUGA.  1985 December. 
[PubMed]

Nayampalli S, Nadkarni P.  Effect of Tinospora cordifolia on antigen- mediated 5-HT release in the isolated rat perfused lung preparation.  1981. 
[PubMed]

Marenco L, Tosches N, Crasto C, Shepherd G, Miller P, Nadkarni P.  Achieving evolvable Web-database bioscience applications using the EAV/CR framework: recent advances..  Journal of the American Medical Informatics Association : JAMIA.  10(5):444-53.
[PubMed]

Nadkarni P.  Clinical patient record systems architecture: an overview..  Journal of postgraduate medicine.  46(3):199-204.
[PubMed]

Nadkarni P, Brandt C.  Data extraction and ad hoc query of an entity-attribute-value database..  Journal of the American Medical Informatics Association : JAMIA.  5(6):511-27.
[PubMed]

Nadkarni P, Marenco L.  Implementing description-logic rules for SNOMED-CT attributes through a table-driven approach..  Journal of the American Medical Informatics Association : JAMIA.  17(2):182-4.
[PubMed]

Nadkarni P.  Information retrieval in medicine: overview and applications..  Journal of postgraduate medicine.  46(2):116-22.
[PubMed]

Miller P, Nadkarni P, Kidd K, Cheung K, Ward D, Banks A, Bray-Ward P, Cupelli L, Herdman V, Marondel I, Montgomery K, Renault B, Yoon S, Krauter K, Kucherlapati R.  Internet-based support for bioscience research: a collaborative genome center for human chromosome 12..  Journal of the American Medical Informatics Association : JAMIA.  2(6):351-64.
[PubMed]

Crasto C, Morse T, Migliore M, Nadkarni P, Hines M, Brash D, Miller P, Shepherd G.  Knowledgebases to Text-mine PUBMED Articles Using Clustering Techniques.  AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 

Skoufos E, Nadkarni P, Miller P, Shepherd G.  Making the connection from odor molecule to olfactory receptor.  AchemS. 

Nadkarni P, Brandt C, Frawley S, Sayward F, Einbinder R, Zelterman D, Schacter L, Miller P.  Managing attribute--value clinical trials data using the ACT/DB client-server database system..  Journal of the American Medical Informatics Association : JAMIA.  5(2):139-51.
[PubMed]

Brandt C, Gadagkar R, Rodriguez C, Nadkarni P.  Managing complex change in clinical study metadata..  Journal of the American Medical Informatics Association : JAMIA.  11(5):380-91.
[PubMed]

Deshpande A, Brandt C, Nadkarni P.  Metadata-driven ad hoc query of patient data: meeting the needs of clinical studies..  Journal of the American Medical Informatics Association : JAMIA.  9(4):369-82.
[PubMed]

Nadkarni P, Darer J.  Migrating existing clinical content from ICD-9 to SNOMED..  Journal of the American Medical Informatics Association : JAMIA.  17(5):602-7.
[PubMed]

Peterson B, Healy M, Nadkarni P, Miller P, Shepherd G.  ModelDB: an environment for running and storing computational models and their results applied to neuroscience..  Journal of the American Medical Informatics Association : JAMIA.  3(6):389-98.
[PubMed]

Mirsky J, Nadkarni P, Hines M, Healy M, Miller P, Shepherd G.  NeuronDB: Web accessible methods for organizing whole neuronal models tools for integrating membrane property data.  AchemS. 

Chapman W, Nadkarni P, Hirschman L, D'Avolio L, Savova G, Uzuner O.  Overcoming barriers to NLP for clinical text: the role of shared tasks and the need for additional creative solutions..  Journal of the American Medical Informatics Association : JAMIA.  18(5):540-3.
[PubMed]

Nadkarni P, Miller R.  Service-oriented architecture in medical software: promises and perils..  Journal of the American Medical Informatics Association : JAMIA.  14(2):244-6.
[PubMed]

Nadkarni P, Brandt C, Marenco L.  WebEAV: automatic metadata-driven generation of web interfaces to entity-attribute-value databases..  Journal of the American Medical Informatics Association : JAMIA.  7(4):343-56.
[PubMed]

Date Last Modified: 06/07/2014 - 21:56:23