Protein Crystallography Facility

  • Software Applications

    The following software applications are available for investigator use on facility instrumentation.

    Software tutorials and step-by-step instructions are available for trained and approved investigators under the "Investigator Resources" link at left.

    Data Collection

    Software Version
    Structure Studio 2.0

    Data Processing

    Software Version
    d*TREK 9.9L
    XDS
    mosflm
    imosflm
    adxv 1.9.6

    Structure Determination

    Software Version
    ARP/wARP 7.0.1
    BnP 1.02
    Buster  
    CCP4 suite 6.3.0
    CNS 1.21
    Phaser 2.1.2
    Phenix 1.6-289
    SHARP 2.6.0
    autoSHARP 3.8.0
    SHELX SHELX-97
    SnB 2.3
    SOLVE/RESOLVE 2.13

    Model Fitting

    Software Version
    O 13.0
    Coot 0.6

    Visualization

    Software Version
    PyMOL 1.5
    Yasara 9.11.9
    Chimera 1.4
    DiscoveryStudio 2.5
    Sybyl 8.1

    Modeling

    Software Version  
    AutoDock 4.0.1
    AutoDockTools 1.5.2-30
    Ligplot 4.4.2
    Modeller 10
    Dock 6.2
    zdock 3.0.1
    APBS 1.10

    Other Tools

    Software Version
    USF  
    WHATIF  
    CAVER  
    RASMOL  
    ClustalW  
    naccess 2.1.1
    BioPython 1.51b
    ATSAS (SAXS) 2.3.1-2