Software
MADS software:
Microarray Analysis of Differential Splicing. A freely available tool for detecting differentially spliced exons from Affymetrix Exon 1.0 array data. Details on MADS algorithm.
GeneBASE software:
Gene-level Background Adjusted Selected probe Expression. A freely available tool for computing Affymetrix Exon array gene-level expression estimates. Details on [background correction] [probe selection].
Isoform-EM:
An expecation-maximization (EM) algorithm for probabilistic reconstructions of full-length isoforms from splice graphs. Source code in R.
Multi-assembly:
A dynamic programming algorithm for reconstructions of multiple transcript isoforms from EST fragment mixtures. Database of alternatively spliced isoforms.
