Xing Laboratory of RNA Genomics and Bioinformatics

Software

  • GeneBASE software: Gene-level Background Adjusted Selected probe Expression. A freely available tool for computing Affymetrix Exon array gene-level expression estimates. Details on [background correction] [probe selection].


  • Isoform-EM: An expecation-maximization (EM) algorithm for probabilistic reconstructions of full-length isoforms from splice graphs. Source code in R.

  • Multi-assembly: A dynamic programming algorithm for reconstructions of multiple transcript isoforms from EST fragment mixtures. Database of alternatively spliced isoforms.

    • © 2007-2008 Xing Laboratory

    Xing Lab, Departments of Internal Medicine and Biomedical Engineering, University of Iowa